Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015823133.1_cds_XP_016501395.1_15127
CDS Infomation

[gene=LOC107819762] [db_xref=GeneID:107819762] [protein=endo-1,4-beta-xylanase A-like isoform X2] [protein_id=XP_016501395.1] [location=complement(join(113448..113792,114195..114571,114737..115142,115236..115334,115427..115596,115697..115913,116050..116099,116773..116851))] [gbkey=CDS]
Sequence

ATGGGACAAGGCAGAAAGTGTTACATGGCTACACTTGGAAATAATGGATTTCTTCTCTGC
TTCTCCTTGTTTTTGGCAGGATATTTGGTTCATGGTGCTACACCTTACGACTATTCAGCA
ACAATAGAGTGCCTCAACCAACCATTGGGTCCTCAATATGAAGGTGGTTTAATTGCAAAT
CCTAGTTTTGACAAGGGCGTAGAAGCATGGAAAGTAGATGGTCATGTAAAAATTGAAGCA
AGGGAATCTGGTGGAAACAAATTTATTGTGGCTTATAATAGAACAACGCCCTTTAGTATT
TCACAATCTTTTAACTTGAAGGAAGGGGTATTTTACACGTTTTCAGCTTGGGTTCAATTA
AGTGAAGGATCGGATATTGTGGTTGCCATGATTTACAACTCAGTCGAAAATACTGTTCAT
GTTGCTGGATCAGTAATAGCTAAATCTGGATGTTGGTCTATGATCAAAGGTGGTCTTACT
GTTGATCAAAATGCACCTTCGGTACTCCATTTTCAGTGCAACAACACCAAGTCCGAGTTA
AGGGTTGACAGTGTTTCTCTGAAGGAATTCAGCAAACATGAGTGGCAGGAAAATCGGTTG
AACAACATAGAGAAGGTTCGGAAAAGAACATTGAGAGTAAATGTAGCAAACAAGAATGGC
AAGAAGATTCAAGGAGCAAAAATCAAGATTCAACAGAAAAAACTTCAATTTGTTATTGGC
TGCGCAACACCATCTTCCATTTTAATGTCCAAATCCTATCAAGAATGGTTCGTGTCCAGG
TTTACAACAACAGTTTTCGACAACGAGATGAAATGGTACTATACCGAAAGGTTACAAGGC
CATGAAAATTACACAACCCCAGATGCAATGCTCAAGTTCTTTATTGATCATGGGATTGAT
GTAAGAGGACATAACATCCTATGGGGAGCAGCTACCCAACGTTGGGTACGAGACTTACCA
CCAAGACAACTTTTAAGTGAATCTGTACGACGAATGGGTAGTGTTATGTCAAGATATGCG
GGTAAACTGGTTGCTTGGGATGTTGTAAATGAGAATTTACACCACCCACTTTTTGAGGAA
AAGCTTGGGAAAAATGCTTCAGCCATCTTTTACAAGATTGCAAGCTCACTAGACACTAAA
GCCACTATGTTCTTGAATGAGTTTAACACTTTAGAGCACCCTGCAGATATGGTCTCTATT
CCATCCAAATACGTTGAAAAGCTTCGGGAGATTAAGGTATTTCCAGGGAATGAGGAGTTG
GTTATTGGAATTGGACTTCAAGGACACTTTGATCCTCATCCTAATATACCATATATTCGT
GCAGTCTTTGATGTTTTAGGAGAAACTAAAATGCCCATTTGGCTCACCGAGTTAAATGTA
GAGCCCTGTCCAAAACAGGCATACTTTTTGGAAGAAATAATGAGGGAAGCATTTGCACAT
CCTGGTGTTAAAGGGATGATGATATGGATAGGATGGAGTCCAAATGGATGCCATGAAATG
TGTCTAGTAGATAGCAAACTCCAGAATTCGCCATCAGGGGATGTGGTTGACAAGCTACTT
GCTGAATGGAAGACAACAAACTTAAACGGAGTTACAGACAAAGCAGGAGCTTTTGAGGTT
AAGGTTTTTCATGGAGATTATTATGTCACAGTTTATAATCCTAAAACTGGTGCCAATGTC
ACAAGGGAAGTGCAGGTCTATGATAATAAGTCTGAAACAGTGGATGTTTCGATTACTTTA
TGA

Peptide Sequence

PEP ID

XP_016501395.1
PEP Infomation

PREDICTED: endo-1,4-beta-xylanase A-like isoform X2 [Nicotiana tabacum]
Sequence

MGQGRKCYMATLGNNGFLLCFSLFLAGYLVHGATPYDYSATIECLNQPLGPQYEGGLIAN
PSFDKGVEAWKVDGHVKIEARESGGNKFIVAYNRTTPFSISQSFNLKEGVFYTFSAWVQL
SEGSDIVVAMIYNSVENTVHVAGSVIAKSGCWSMIKGGLTVDQNAPSVLHFQCNNTKSEL
RVDSVSLKEFSKHEWQENRLNNIEKVRKRTLRVNVANKNGKKIQGAKIKIQQKKLQFVIG
CATPSSILMSKSYQEWFVSRFTTTVFDNEMKWYYTERLQGHENYTTPDAMLKFFIDHGID
VRGHNILWGAATQRWVRDLPPRQLLSESVRRMGSVMSRYAGKLVAWDVVNENLHHPLFEE
KLGKNASAIFYKIASSLDTKATMFLNEFNTLEHPADMVSIPSKYVEKLREIKVFPGNEEL
VIGIGLQGHFDPHPNIPYIRAVFDVLGETKMPIWLTELNVEPCPKQAYFLEEIMREAFAH
PGVKGMMIWIGWSPNGCHEMCLVDSKLQNSPSGDVVDKLLAEWKTTNLNGVTDKAGAFEV
KVFHGDYYVTVYNPKTGANVTREVQVYDNKSETVDVSITL

Transcript Sequence

Gene sequence data has not been registered.